... We set up a base station on a surveyed benchmark...
The bottom line is you have to trust the equipment. But I don't trust the equipment so I have more equipment to check the numbers multiple times. If they come up close (1-2cm) THEN I know we did it right.
Thanks for clarifying that- seems like a solid workflow. I'm not a RLS, but I work with and for surveyors, and have been using survey equipment for 20 years- and I've learned its extremely important to trust but verify your tools.
It's also important to know the limits of the equipment, and the workflows. Compounding error is a beast. You're only as good as the weakest link.
This means that your UAV 3d reconstruction can only be as good as your GCPs (or geotags).
So it is important to remember that the very best Z accuracy you can expect from a RTK GNSS is 1.5cm. (If you go PPP for 7 hours you could get sub centimeter.) RTK accuracy decreases with baseline distance, and more importantly user error. Wiggle the pole, take a short reading, sink the tip into the ground, translate to orthometric heights/change datums- and you're well beyond 1.5cm.
The sames goes for SfM. The best we can expect is 1-3x GSD in Z. So it's tempting to jack up the GSD, but keep in mind the overall accuracy is still tied to your GCPs; and subject to all kinds of potential user error- or in the case of cloud based processing- all kinds of simplification/generalization.
All of this is to say that TA may be a incremental improvement in your orthophoto (and frankly can save a ton of time in mission planning for large/complex sites); but it isn't a magic bullet that is going to noticeably improve the accuracy of earthwork calculations.